rs6669407 chr1:3403500 A>G

Sequence
cttctcagatggtaggcaagagcc[A/G]gaaggggtcacccctatccccaag
ASB for transcription factors
CTCF_HUMAN GLIS1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.88 0.24 2.1·10-41.00 1.36 -1.88 Weak Concordant
GLIS1_HUMAN 2.76 -4.99 9.5·10-31.00 2.00 n/a No Hit
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

GRASP fasting blood glucose,  hdl cholesterol,  homa-ir,  ldl cholesterol,  total cholesterol,  urinary albumin-to-creatinine ratio

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