rs6669998 chr1:151549031 G>C
- Sequence
ctccctgctttgaggagtgagtca[G/C]ggttggagatttgtttgaacagag
- ASB in cell types
- HEK293 (embryonic kidney) BEAS-2B (bronchial epithelium) SK-N-SH (neuroblastoma) ZR-75-1 (invasive ductal carcinoma)
- ASB for transcription factors
- ZN394_HUMAN GCR_HUMAN ZN398_HUMAN IKZF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN394_HUMAN | n/a | 1.73 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.61 | 1.19 | 1.40 | n/a | No Hit | |||
| ZN398_HUMAN | n/a | 1.68 | 2.00 | n/a | n/a | |||
| IKZF3_HUMAN | n/a | 3.53 | 2.00 | n/a | n/a | |||
| FEZF1_HUMAN | n/a | 3.44 | 2.00 | n/a | No Hit |
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Motif analysis
