rs6672334 chr1:178485633 G>A
- Sequence
ttccaaaccgtcctgactgtctcc[G/A]ttagttcctatgagaccatgtgct
- ASB in cell types
- ICN12 (primary pre-B acute lymphomablastic leukemia) NALM-6 (adult B acute lymphoblastic leukemia) pre-B acute lymphoblastic leukemia
- ASB for transcription factors
- PBX1_HUMAN IKZF1_HUMAN TFE2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PBX1_HUMAN | 2.88 | n/a | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.18 | -1.52 | 1.25 | n/a | n/a | |||
| TFE2_HUMAN | 3.45 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, eur students <30 colorword, hdl cholesterol, ldl cholesterol, rheumatoid arthritis, sporadic creutzfeldt-jakob disease, systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid