rs6672595 chr1:169546298 C>T
- Sequence
tgctatgatgtcacccacggattt[C/T]atcaccaagtctttggactggaag
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN ATF7_HUMAN ATF2_HUMAN TBX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 3.20 | n/a | 1.50 | n/a | No Hit | |||
| ATF7_HUMAN | 3.29 | 0.85 | 2.00 | -3.78 | Concordant | |||
| ATF2_HUMAN | 2.75 | 0.88 | 1.67 | -3.38 | Concordant | |||
| TBX3_HUMAN | 3.14 | -2.94 | 1.00 | n/a | No Hit | |||
| CREB1_HUMAN | 2.59 | -2.29 | 1.00 | n/a | No Hit |
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Motif analysis
