rs6672722 chr1:234600061 C>G
- Sequence
gggcggggggcgcgaggaggtggc[C/G]gggcccgggctgcggtccctctaa
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) HeLa (cervical adenocarcinoma) SMMC-7721 (hepatocellular carcinoma)
- ASB for transcription factors
- INT11_HUMAN TYY1_HUMAN RBM25_HUMAN PTEN_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| INT11_HUMAN | 1.43 | -2.88 | 2.00 | n/a | n/a | |||
| TYY1_HUMAN | 1.30 | 1.76 | 2.67 | 1.23 | Weak Concordant | |||
| RBM25_HUMAN | 0.03 | 1.84 | 2.00 | n/a | n/a | |||
| PTEN_HUMAN | -2.62 | 1.75 | 1.33 | n/a | n/a |
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Motif analysis
