rs6673519 chr1:33350177 C>T
- Sequence
actcccgccttggaccgttcactc[C/T]ctgaggggcctgggggtcagtcag
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor 22RV1 (prostate carcinoma) NOMO-1 (acute monocytic leukemia)
- ASB for transcription factors
- ANDR_HUMAN ILF3_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.03 | -1.05 | 2.00 | n/a | No Hit | |||
| ILF3_HUMAN | 1.46 | -1.21 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.67 | -0.16 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Kidney_Cortex, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Uterus, Whole_Blood