rs6673648 chr1:55429220 C>A
- Sequence
gcactcgctcactccaaggatttt[C/A]cattctttggagaacctttcactc
- ASB in cell types
- MCF10A (breast epithelial cells) HUVEC-C (HUVEC, umbilical vein endothelial cells) HASM2 (Human airway smooth muscle 2) renal cortex
- ASB for transcription factors
- TEAD4_HUMAN NCOA3_HUMAN TF65_HUMAN NOTC1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD4_HUMAN | -1.48 | 1.48 | 1.00 | 3.60 | Concordant | |||
| NCOA3_HUMAN | -1.86 | 1.86 | 1.00 | n/a | n/a | |||
| TF65_HUMAN | 0.70 | 1.22 | 1.33 | -5.46 | Discordant | |||
| NOTC1_HUMAN | n/a | 1.90 | 2.50 | n/a | n/a | |||
| YAP1_HUMAN | -1.42 | 1.86 | 1.25 | n/a | n/a |
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Motif analysis
