rs6673829 chr1:3774926 G>A
- Sequence
ccagaaggcgccttatcgggcagg[G/A]ttaaggagggggacagttatcagg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- COT1_HUMAN MTG16_HUMAN KDM1A_HUMAN HDAC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 3.23 | -3.00 | 1.00 | -3.69 | Concordant | |||
| MTG16_HUMAN | 0.57 | n/a | 1.50 | n/a | n/a | |||
| KDM1A_HUMAN | 1.56 | 1.27 | 1.00 | n/a | n/a | |||
| HDAC2_HUMAN | 2.01 | -1.74 | 1.00 | n/a | n/a | |||
| VEZF1_HUMAN | 1.78 | -3.14 | 1.50 | -0.54 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood