rs6674775 chr1:110407817 C>T

Sequence
ccgtcgcacagagcctgacgaagg[C/T]ttgggctccccgcgcggtgaccgt
ASB in cell types
HEK293 (embryonic kidney) neural cell Peyer's patch foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN BRD4_HUMAN RAD21_HUMAN GABPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.17 0.54 2.9·10-51.00 1.22 n/a No Hit
BRD4_HUMAN 0.86 0.27 0.011.00 1.27 n/a n/a
RAD21_HUMAN 2.05 0.58 0.020.91 1.47 n/a n/a
GABPA_HUMAN 1.03 0.37 0.051.00 1.38 n/a No Hit
Items per page:
1 – 4 of 4

Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  chronic kidney disease,  microalbuminuria,  rheumatoid arthritis,  serum creatinine
GTEx eQTL Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Nerve_Tibial,  Ovary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

Download