rs6677964 chr1:30194442 G>A
- Sequence
ggtttcctgtgttggcatacgtcc[G/A]gggtcttgcatcacttttcccaac
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NFIC_HUMAN COT1_HUMAN ATF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | -1.65 | 1.65 | 1.00 | 4.15 | Concordant | |||
| COT1_HUMAN | -2.09 | 2.49 | 1.00 | 1.32 | Weak Concordant | |||
| ATF3_HUMAN | -1.95 | 2.04 | 1.17 | n/a | No Hit |
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Motif analysis
