rs6679453 chr1:231054072 A>G

Sequence
gagcaccagacagaattaatttac[A/G]caaagtcatcagtgtttcctacag
ASB in cell types
CD14+ monocytes THP-1 (acute monocytic leukemia) A549 (lung carcinoma)
ASB for transcription factors
STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN -1.08 2.34 1.007.2·10-3 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  asthma,  college completion,  irritible bowel syndrome,  ldl cholesterol change with statins,  tetrology of fallot,  transmission distortion
GTEx eQTL Brain_Cerebellum,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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