rs6679562 chr1:224014235 G>A
- Sequence
aatgtaatagaatgaaaattactc[G/A]aatggaatggaatggaatggaatg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) MCF10A (breast epithelial cells)
- ASB for transcription factors
- IKZF2_HUMAN NFIB_HUMAN TEAD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.52 | -1.49 | 1.00 | n/a | n/a | |||
| NFIB_HUMAN | 2.46 | -2.49 | 1.00 | n/a | No Hit | |||
| TEAD4_HUMAN | 2.26 | -1.95 | 1.00 | -1.77 | Weak Concordant |
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Motif analysis
