rs6680255 chr1:19251559 C>G
- Sequence
gccgtcccggcatgcaccgcgccg[C/G]gggctccgcctccgcgggaccaca
- ASB in cell types
- 22RV1 (prostate carcinoma) primary B-CLL cells CD14+ monocytes breast tumor
- ASB for transcription factors
- ANDR_HUMAN STAT1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.26 | n/a | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.57 | n/a | 4.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.78 | -4.45 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid