rs6680461 chr1:162285496 T>G

Sequence
gcaaactggagccatgtcctcaag[T/G]gcatgccaatcaaaccaactttaa
ASB in cell types
breast tumor 22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.42 0.34 4.5·10-31.00 2.33 n/a No Hit
ESR1_HUMAN 2.60 -0.30 0.041.00 1.75 4.13 Discordant
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Motif analysis

ESR1_HUMAN Discordant
ESR1_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  body mass index (bmi),  triglycerides change with statins
GTEx eQTL Adrenal_Gland,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Heart_Left_Ventricle,  Lung,  Skin_Sun_Exposed_Lower_leg

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