rs6681078 chr1:93879284 A>C
- Sequence
atctccgcccagccagttcaggcc[A/C]gggcggtcagagacaaagggcctg
- ASB in cell types
- CD14+ monocytes HCT-116 (colon carcinoma) fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- STAT1_HUMAN ZFX_HUMAN SPI1_HUMAN RXRA_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.12 | n/a | 2.00 | n/a | No Hit | |||
| ZFX_HUMAN | -0.82 | 2.06 | 1.00 | 1.06 | Weak Concordant | |||
| SPI1_HUMAN | 1.05 | 0.70 | 1.47 | n/a | No Hit | |||
| RXRA_HUMAN | -3.65 | 2.03 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Vagina, Whole_Blood