rs6681644 chr1:54887409 C>G
- Sequence
cgcgcgaggcgggggtgccaggga[C/G]tgggtgccggtggggtccgctgcg
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) HepG2 (hepatoblastoma) neural cell
- ASB for transcription factors
- RBM25_HUMAN PRDM9_HUMAN LMBL2_HUMAN ZFHX2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 1.06 | -0.86 | 2.00 | n/a | n/a | |||
| PRDM9_HUMAN | 2.98 | -4.98 | 1.50 | n/a | No Hit | |||
| LMBL2_HUMAN | 2.36 | n/a | 2.00 | n/a | n/a | |||
| ZFHX2_HUMAN | n/a | 2.11 | 2.00 | n/a | n/a | |||
| GCR_HUMAN | -0.11 | 1.06 | 1.04 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Testis, Whole_Blood