rs6681671 chr1:114758064 C>T
- Sequence
gggcggagtgaagcgtactctcaa[C/T]acgcttgcgcagcagggctaagtg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) MCF7L-P(immortalized breast epithelial cell line) CD14+ monocytes
- ASB for transcription factors
- FOXA1_HUMAN NELFE_HUMAN NRF1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.19 | 2.69 | 2.50 | n/a | No Hit | |||
| NELFE_HUMAN | -0.35 | 1.87 | 3.62 | n/a | n/a | |||
| NRF1_HUMAN | -0.11 | 2.92 | 1.85 | -0.04 | Weak Discordant | |||
| STAT1_HUMAN | 1.90 | 0.24 | 1.75 | n/a | No Hit | |||
| MEIS2_HUMAN | -1.33 | 1.33 | 1.00 | n/a | No Hit |
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Motif analysis
