rs6684252 chr1:16889640 G>C
- Sequence
ggaagggagttagttcagtgagtg[G/C]gcccttcccatatcaccagtagaa
- ASB in cell types
- spleen macrophages form periferal blood renal cortex monocyte-derived dendritic cells
- ASB for transcription factors
- SPI1_HUMAN CTCF_HUMAN CREB1_HUMAN EP300_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.57 | 2.67 | 1.44 | 0.03 | Weak Concordant | |||
| CTCF_HUMAN | 0.75 | 2.13 | 1.73 | n/a | No Hit | |||
| CREB1_HUMAN | n/a | 3.43 | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | -0.28 | 1.59 | 1.50 | n/a | n/a |
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Motif analysis
