rs6684265 chr1:117562932 G>A

Sequence
gaaatgtccacaggggcctggttg[G/A]catcatcacctcacctttagggag
ASB in cell types
ZR-75-1 (invasive ductal carcinoma) breast tumor
ASB for transcription factors
FOXA1_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.02 1.54 1.003.1·10-7 1.56 n/a No Hit
ESR1_HUMAN -0.38 3.19 0.962.1·10-5 2.00 2.35 Concordant
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Motif analysis

ESR1_HUMAN Concordant
ESR1_HUMAN pic

Genetic associations

GRASP acute lung injury following major trauma,  hdl cholesterol,  hypertension (early onset hypertension),  ldl cholesterol,  total cholesterol

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