rs6685701 chr1:26542148 A>G
- Sequence
gccccttggtttatctcagcccgt[A/G]tctggagagtctcctcccacaaag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) ME-1 (acute myeloid leukemia )
- ASB for transcription factors
- GATA2_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA2_HUMAN | 3.26 | -2.57 | 1.00 | -1.53 | Weak Concordant | |||
| FOXK2_HUMAN | -3.22 | 3.47 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Thyroid