rs6686067 chr1:160132270 C>T

Sequence
gtactgggggttgagactggaaca[C/T]tgggtcagagccagttggaaggac
ASB in cell types
breast tumor 22RV1 (prostate carcinoma)
ASB for transcription factors
PPARG_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PPARG_HUMAN n/a 2.47 1.002.7·10-3 2.75 -1.86 Weak Discordant
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Motif analysis

PPARG_HUMAN Weak Discordant
PPARG_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  bipolar disorder,  birth weight,  parkinsons disease
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Stomach

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