rs6687063 chr1:11908173 T>C
- Sequence
gttatactctggtttctcttcaaa[T/C]cgtataaatctttcgccttttact
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) K562 (myelogenous leukemia) HCT-116 (colon carcinoma) pulmonary artery endothelial cell
- ASB for transcription factors
- CTCF_HUMAN MBD4_HUMAN TBP_HUMAN C2D1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.58 | 1.36 | 1.18 | n/a | No Hit | |||
| MBD4_HUMAN | 1.67 | -0.32 | 1.29 | n/a | n/a | |||
| TBP_HUMAN | 0.13 | 0.51 | 1.11 | n/a | No Hit | |||
| C2D1A_HUMAN | -1.71 | 2.04 | 1.00 | n/a | n/a | |||
| MED16_HUMAN | 1.59 | 0.26 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood