rs6687891 chr1:248807276 T>C
- Sequence
caacacgcagtgcgcgcagggaaa[T/C]gcagagcccaggctctgcgcactt
- ASB in cell types
- T47D (invasive ductal carcinoma) GM19193 (female B-cells Lymphoblastoid Cell Lines) CD34+ stem cells-derived erythroblasts WA01 (H1, human embryonic stem cells)
- ASB for transcription factors
- RAD21_HUMAN KDM5B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.36 | 0.23 | 1.40 | n/a | n/a | |||
| KDM5B_HUMAN | 2.94 | -5.27 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood