rs6688315 chr1:208132452 G>C
- Sequence
cccagccctgctgttggacagctt[G/C]gtggccctgggcaaattacttagt
- ASB in cell types
- foreskin keratinocyte gastroesophageal sphincter thoracic aorta VCaP (prostate carcinoma)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.76 | 0.49 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.36 | 0.86 | 1.44 | -3.50 | Discordant |
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Motif analysis
