rs6688329 chr1:8602999 G>A

Sequence
taatctagctaagaggacagacac[G/A]tacagaggcatgatgtgagaatga
ASB in cell types
MS-1 (Small cell lung carcinoma) 2588 (Lymphoblastoid Cell Lines)
ASB for transcription factors
STAG1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN -0.66 2.10 0.995.6·10-3 1.00 n/a n/a
CTCF_HUMAN -0.39 1.88 0.996.6·10-3 1.17 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  ldl cholesterol,  serum creatinine,  total cholesterol,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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