rs6688416 chr1:62759580 A>C
- Sequence
ctgggggaacccccattaaatacc[A/C]caaagaaattatggagttattgca
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.21 | -0.36 | 1.06 | n/a | No Hit | |||
| STAG1_HUMAN | 1.26 | -0.53 | 1.06 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood