rs6688602 chr1:101371523 G>T
- Sequence
tgagcctgaaaggtgaagctaatg[G/T]gtgagctgcaatcatagcctccct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Th1-cells HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- TBX21_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -0.35 | 2.39 | 1.83 | 4.64 | Concordant | |||
| MEF2B_HUMAN | -1.48 | 1.75 | 1.00 | n/a | No Hit |
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Motif analysis
