rs6690515 chr1:1511945 G>A
- Sequence
cggatgcggcgcggggctgacgct[G/A]ccttgggttcgcctacgtccctcg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells fetal bone marrow-derived mononuclear cells K562 (myelogenous leukemia)
- ASB for transcription factors
- RBM25_HUMAN FOXK2_HUMAN HTF4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 3.19 | -0.48 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.59 | 0.68 | 1.25 | n/a | No Hit | |||
| HTF4_HUMAN | 2.57 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood