rs6691952 chr1:210598056 A>G

Sequence
tgtcaacaggtgatttattttgtc[A/G]ggactgcatccttcccttcaaagc
ASB in cell types
A549 (lung carcinoma) keratinocytes
ASB for transcription factors
JUN_HUMAN SNAI2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
JUN_HUMAN -0.28 1.32 1.003.8·10-3 1.85 n/a No Hit
SNAI2_HUMAN 2.50 -2.08 0.011.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  fasting blood glucose,  hdl cholesterol,  irritible bowel syndrome,  serum creatinine,  years of education

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