rs6695033 chr1:18875425 T>C
- Sequence
cccccgtgaggccatagctggtgg[T/C]gctgtcaaccagctgcagcgtctc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.86 | 0.10 | 1.32 | 2.33 | Discordant | |||
| STAG1_HUMAN | 1.00 | -0.45 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.90 | -0.57 | 1.25 | n/a | n/a |
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Motif analysis
