rs6695836 chr1:200642582 C>T
- Sequence
caacagaagagcagacatgtgaga[C/T]aaggaagttgccaaaggaaagatc
- ASB in cell types
- K562 (myelogenous leukemia) MDM(monocyte derived macrophages) monocyte-derived macrophages from peripheral blood
- ASB for transcription factors
- SPI1_HUMAN HDAC1_HUMAN SMCA4_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.44 | 1.95 | 1.72 | 2.47 | Concordant | |||
| HDAC1_HUMAN | n/a | 2.66 | 3.00 | n/a | n/a | |||
| SMCA4_HUMAN | n/a | 3.16 | 3.00 | n/a | n/a | |||
| REQU_HUMAN | n/a | 2.36 | 3.00 | n/a | n/a | |||
| ARI1B_HUMAN | n/a | 1.79 | 3.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus