rs6696368 chr1:36401278 T>C
- Sequence
ggaagggtcaccactcttcactcc[T/C]gcagtctgggagtgtgtcaccacc
- ASB in cell types
- K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) SEM (childhood B acute lymphoblastic leukemia)
- ASB for transcription factors
- GABP1_HUMAN ZBT40_HUMAN SKIL_HUMAN NELFE_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | n/a | 1.09 | 1.00 | n/a | n/a | |||
| ZBT40_HUMAN | -0.84 | 1.21 | 1.00 | n/a | No Hit | |||
| SKIL_HUMAN | -2.75 | 2.65 | 1.00 | n/a | n/a | |||
| NELFE_HUMAN | -0.27 | 2.23 | 1.00 | n/a | n/a | |||
| ERG_HUMAN | -3.01 | 1.84 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid