rs6696816 chr1:184606961 C>T

Sequence
cagctgggaaggaattatgaggca[C/T]attatgttctgaacattgcttgaa
ASB in cell types
LHSAR (prostate epithelial cells) gastroesophageal sphincter renal cortex ovary
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN CREB1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 3.64 0.11 4.2·10-71.00 1.00 n/a No Hit
ANDR_HUMAN 1.93 0.05 1.0·10-61.00 1.78 -5.96 Concordant
CREB1_HUMAN 3.12 n/a 1.9·10-41.00 1.00 n/a No Hit
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Motif analysis

ANDR_HUMAN Concordant
ANDR_HUMAN pic

Genetic associations

GRASP birth weight,  partial epilepsy,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid

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