rs6697555 chr1:20961445 C>T
- Sequence
atgtacacagtttcagtgtaccca[C/T]aaaaatttaacacattcacataat
- ASB in cell types
- 22RV1 (prostate carcinoma) prostate cancer
- ASB for transcription factors
- ANDR_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -1.38 | 2.37 | 1.67 | n/a | No Hit | |||
| HXB13_HUMAN | -1.94 | 2.89 | 2.00 | 5.53 | Concordant |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GRASP adiponectin levels, diabetic retinopathy in type 2 diabetes mellitus, hdl cholesterol, ldl cholesterol, ldl cholesterol change with statins, total cholesterol change with statins
GTEx eQTL Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood