rs6698036 chr1:183633882 A>G

Sequence
ccaatcagactgtcagaatgtaca[A/G]acattcccctaaaaggaaaaccac
ASB in cell types
foreskin keratinocyte GM19239 (male B-cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.75 0.35 3.3·10-61.00 1.37 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Testis

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