rs6698159 chr1:110407655 G>A
- Sequence
gaccactccggctcagaacccagc[G/A]gcacggcacgtccttctccaccac
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes 22RV1 (prostate carcinoma) adult erythroblasts
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN ESR1_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.25 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 3.13 | n/a | 2.00 | 0.13 | Weak Discordant | |||
| ESR1_HUMAN | 1.86 | -1.23 | 1.50 | n/a | No Hit | |||
| REQU_HUMAN | -0.17 | 2.08 | 1.00 | n/a | n/a | |||
| HDAC2_HUMAN | -0.80 | 1.41 | 1.00 | n/a | n/a |
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Motif analysis
