rs66985080 chr17:48892813 C>G
- Sequence
gacacgtgggtgggggaagctgag[C/G]gctgagaccaagggctaaagctgg
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) HCT-116 (colon carcinoma) CD14+ monocytes
- ASB for transcription factors
- RBM25_HUMAN ZBT8A_HUMAN STAT1_HUMAN NFYA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | 0.84 | n/a | 2.00 | n/a | n/a | |||
| ZBT8A_HUMAN | 0.24 | 1.42 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.34 | n/a | 2.00 | n/a | No Hit | |||
| NFYA_HUMAN | 2.33 | -1.93 | 1.00 | n/a | No Hit | |||
| SP7_HUMAN | 1.76 | -2.82 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood