rs6699152 chr1:33396693 G>A

Sequence
atctaagtgctgttcacagccaag[G/A]aaccctctggtatggggagagagt
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ZN766_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN766_HUMAN -4.70 2.87 1.004.3·10-3 1.50 5.76 Concordant
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Motif analysis

ZN766_HUMAN Concordant
ZN766_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Kidney_Cortex,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pituitary,  Prostate,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Thyroid,  Uterus,  Whole_Blood

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