rs6700140 chr1:204764020 A>C
- Sequence
gccctccagcggtgggcgcagagc[A/C]ctaggctccaaaactaggaagccg
- ASB in cell types
- K562 (myelogenous leukemia) THP-1 (acute monocytic leukemia) HBMEC (human brain microvascular endothelial cells) GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- ZFHX2_HUMAN SOX6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFHX2_HUMAN | 2.19 | n/a | 2.00 | n/a | n/a | |||
| SOX6_HUMAN | 2.89 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), homa-b, microalbuminuria, total cholesterol
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Prostate, Stomach