rs6700896 chr1:65624099 C>T

Sequence
atttgtagtactcctcctgctgtt[C/T]tttatgtgcaaagcactgagatac
ASB in cell types
LNCaP (prostate carcinoma) GM12891 (male B- cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.70 0.06 2.6·10-51.00 1.29 -0.94 Weak Concordant
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

EMBL-EBI c-reactive protein,  c-reactive protein levels,  mean corpuscular hemoglobin,  mean corpuscular volume
GRASP acute lung injury following major trauma,  baseline acute-phase serum amyloid concentrations,  c-reactive protein (crp),  chronic kidney disease,  serum creatinine,  weight
GTEx eQTL Pancreas

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