rs6701018 chr1:247937031 G>A
- Sequence
ctcttggggccaatcaccgacccg[G/A]ccaccaggtggcgcctgtttatca
- ASB in cell types
- GM18951 (B-cells Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma) foreskin keratinocyte CUTLL1 (T-cell lymphoblastic lymphoma 1)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.54 | 0.68 | 1.57 | -1.08 | Weak Concordant | |||
| STAG1_HUMAN | 3.35 | 0.30 | 1.08 | n/a | n/a |
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Motif analysis
