rs6701414 chr1:172230108 T>A
- Sequence
tctgatgatggctttgccatgttg[T/A]catggttttttgtttgtttgtttg
- ASB in cell types
- LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -1.48 | 2.58 | 3.58 | 4.06 | Concordant |
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Motif analysis
Genetic associations
GRASP coronary artery disease (cad), hdl cholesterol, height, ldl cholesterol, mitral annular calcium