rs6701521 chr1:31410448 T>C
- Sequence
cccagccacacagtgagttatgcc[T/C]tccatgctgggcgtgtgagagccc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- PKNX1_HUMAN REQU_HUMAN HDAC2_HUMAN TAL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 2.90 | -2.56 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | 2.69 | -2.04 | 1.00 | n/a | n/a | |||
| HDAC2_HUMAN | 2.71 | n/a | 1.00 | n/a | n/a | |||
| TAL1_HUMAN | 2.27 | -0.07 | 1.50 | n/a | No Hit | |||
| NCOR1_HUMAN | 1.82 | -1.30 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood