rs6702462 chr1:165842883 A>C
- Sequence
ctctttgccttatcggtcctcccc[A/C]accctgagttgtcagcacttccag
- ASB in cell types
- SUP-B15 (Childhood B acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) BEAS-2B (bronchial epithelium) pre-B acute lymphoblastic leukemia
- ASB for transcription factors
- GCR_HUMAN IKZF1_HUMAN SRF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.22 | 2.93 | 1.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.80 | 2.12 | 2.12 | n/a | n/a | |||
| SRF_HUMAN | -2.33 | 2.67 | 1.00 | n/a | No Hit |
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