rs6702639 chr1:94759401 T>A

Sequence
aaatgtatttgcaatcccaaaatc[T/A]atacttgtggtcctttcaaggtca
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
P66A_HUMAN TBX3_HUMAN CEBPG_HUMAN FOXP1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
P66A_HUMAN -3.51 3.76 1.003.7·10-6 1.00 n/a n/a
TBX3_HUMAN -3.61 3.29 1.006.6·10-4 1.00 n/a No Hit
CEBPG_HUMAN -5.13 3.15 1.008.9·10-4 1.50 n/a No Hit
FOXP1_HUMAN -4.57 2.60 1.000.03 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  college completion,  years of education
GTEx eQTL Artery_Tibial,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Nerve_Tibial,  Pancreas,  Stomach

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