rs6703571 chr1:185441546 T>C

Sequence
aatttggtttttaaggtctttcgc[T/C]gattgaatcagacccactcagatt
ASB in cell types
D283 Med (medulloblastoma)
ASB for transcription factors
OTX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
OTX2_HUMAN 2.41 n/a 9.5·10-41.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  barnes akathisia rating scale,  hdl cholesterol,  irritible bowel syndrome,  ldl cholesterol,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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