rs6703700 chr1:13620091 G>A

Sequence
tctatttctacatccaagggctcc[G/A]ggccatagtacagacagtcctatg
ASB in cell types
22RV1 (prostate carcinoma) LNCaP95 breast tumor myometrium
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
22RV1 (prostate carcinoma) 2.17 n/a 6.2·10-41.00 2.00
LNCaP95 1.06 0.17 0.021.00 1.75
breast tumor 1.22 -4.12 0.041.00 2.00
myometrium 1.15 -0.11 0.051.00 1.00
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  college completion,  homa-ir,  ldl cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid

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