rs6704281 chr1:221334304 C>T
- Sequence
atagagtacattccaagaggaagt[C/T]gatgtcaagtatttggataaacag
- ASB in cell types
- MDM(monocyte derived macrophages)
- ASB for transcription factors
- SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | -0.00 | 1.58 | 2.00 | 1.30 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP ldl cholesterol, neuroticism, obesity with early age of onset (age >2), suicide attempts in major depressive disorder, suicide attempts in mood disorder patients
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Skin_Sun_Exposed_Lower_leg, Testis