rs67460888 chr1:41003665 T>C
- Sequence
cgtacttcacatgattaagggaga[T/C]aatgtatgtaaatagtctctagta
- ASB in cell types
- K562 (myelogenous leukemia) HCASMC (Human coronary artery smooth muscle cells) breast tumor xenograft
- ASB for transcription factors
- HES1_HUMAN HDAC2_HUMAN TCF21_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HES1_HUMAN | 0.90 | n/a | 1.50 | n/a | No Hit | |||
| HDAC2_HUMAN | 1.59 | -1.07 | 1.00 | n/a | n/a | |||
| TCF21_HUMAN | 1.41 | n/a | 3.00 | n/a | No Hit | |||
| HDAC1_HUMAN | 1.00 | -0.64 | 1.00 | n/a | n/a | |||
| FOXA1_HUMAN | 1.57 | -0.33 | 1.12 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid