rs6794 chr3:45011283 G>C

Sequence
ctgcatgcctccttgcagagtgtt[G/C]tgcacaaggaagaaagcctggggc
ASB in cell types
BEAS-2B (bronchial epithelium) LHSAR (prostate epithelial cells)
ASB for transcription factors
GCR_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN -0.09 1.56 1.006.4·10-7 1.00 5.92 Concordant
ANDR_HUMAN 0.67 3.96 0.574.4·10-5 2.00 5.41 Concordant
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Motif analysis

ANDR_HUMAN Concordant
ANDR_HUMAN pic

Genetic associations

GRASP handedness in individuals with dyslexia (pegq test),  ldl cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Spinal_cord_cervical_c-1,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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